Research

Also see: ResearchGate & Google Scholar

Papers

Y. Jain, […] A. Bueckle, […], “Exploring endothelial cell environments across organs in spatially resolved omics data,” bioRxiv preprint https://www.biorxiv.org/content/10.1101/2025.09.23.678129 , 2025. doi: 10.1101/2025.09.23.678129

A. Bueckle, B. W. Herr II, L. Chen, D. Bolin, D. Qaurooni, M. Ginda, Y. Jain, A. Puig-Barbe, K. Ardlie, F. Wang, K. Börner, “Cell type populations for 3D anatomical structures of the Human Reference Atlas,” bioRxiv preprint 10.1101/2025.08.14.670406, 2025. doi: 10.1101/2025.08.14.670406

A. Bueckle, B. W. Herr II, J. Hardi, E. M. Quardokus, M. Musen, K. Börner, “Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph,” Nature Scientific Data, 2025. doi: 10.1038/s41597-025-05183-6 [Luddy News Item] [SenNet Sentinel News Item]

J. Hu, B. Peng, A. Pankajam, B. Xu, V. Deshpande, A. Bueckle, B. W. Herr II, K. Börner, C. Dupont, R. H. Scheuermann, Y. Zhang, “Benchmarking single cell transcriptome matching methods for incremental growth of reference atlases,” bioRxiv preprint 10.1101/2025.04.10.648034, 2025. [Online]. Available: 10.1101/2025.04.10.648034

K. Börner, P. Blood, […] A. Bueckle, B. W. Herr II, “Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas Construction and Usage,” Nature Methods, 2025. doi: 10.1038/s41592-024-02563-5.
[Press Release HuBMAP] [Press Release Luddy SICE]

Blanka Rogina, […], A. Bueckle, […], “Symposia Report of The Annual Biological Sciences Section Meeting of the Gerontological Society of America 2023, Tampa, Florida,” The Journals of Gerontology: Series A, 2025. doi: https://doi.org/10.1093/gerona/glaf026

A. Bueckle, “Building a Human Reference Atlas,” Gerontological Society of America Annual Meeting 2023, Panel on Senescence New Frontiers – SenNet Consortium (November), 2023. doi: 10.1093/geroni/igad104.1556

A. Bueckle, C. Qing, S. Luley, Y. Kumar, N. Pandey, and K. Börner, “The HRA Organ Gallery affords immersive superpowers for building and explorring the Human Reference Atlas with virtual reality,” Frontiers in Bioinformatics, vol. 3, 2023. doi: 10.3389/fbinf.2023.1162723

Y. Jain, […] A. Bueckle, […], K. Börner, “Segmentation of human functional tissue units in support of a Human Reference,” Nature Communications Biology, 2023. doi: 10.1038/s42003-023-04848-5

B. W. Herr II, J. Hardi, E. M. Quardokus, A. Bueckle, L. Chen, F. Wang, A. R. Caron, D. Osumi-Sutherland, M. A. Musen, and K. Börner, “Specimen, Biological Structure, and Spatial Ontologies in Support of a Human Reference Atlas,” Nature Scientific Data, 2023. doi: 10.1038/s41597-023-01993-8

K. Börner, A. Bueckle, et al., “Tissue Registration and Exploration User Interfaces in support of a Human Reference Atlas,” Nature Communications Biology, 2022. doi: 10.1038/s42003-022-03644-x

L. Chen, D. Teng, T. Zhu, J. Kong, B.W. Herr II, A. Bueckle, K. Börner, F. Wang, “Real-Time Spatial Registration for 3D Human Atlas,” BigSpatial ’22: Proceedings of the 10th ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data, 2022. doi: 10.1145/3557917.3567618.

NIH SenNet Consortium (incl. A. Bueckle), “NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health,” Nature Aging, 2022. doi: https://doi.org/10.1038/s43587-022-00326-5

A. Bueckle, K. Buehling, P. C. Shih, and K. Börner, “Optimizing Performance and Satisfaction in Matching and Movement Tasks in Virtual Reality with Interventions Using the Data Visualization Literacy Framework,” Frontiers in Virtual Reality, vol. 2, 2022. doi: 10.3389/frvir.2021.727344.

A. Bueckle, K. Browne, B. W. Herr II, K. Börner, “The CCF Organ VR Gallery,” OSF preprint, 2022. [Online]. Available: https://osf.io/z9gm3 doi: 10.31219/osf.io/z9gm3

Bueckle, K. Browne, B. W. Herr II, K. Börner, “The CCF Organ VR Gallery,” Research Demo, 2022. [Online]. Available: https://youtu.be/S9pBOlSfsnc

B. Lutnick, D. Manthey, […] KPMP Consortium (A. Bueckle), “A user-friendly tool for cloud-based whole slide image segmentation with examples from renal histopathology,” Nature Communications Medicine, 2022. doi: 10.1038/s43856-022-00138-z

A. Bueckle, K. Buehling, P. C. Shih, and K. Börner, “Optimizing Performance and Satisfaction in Matching and Movement Tasks in Virtual Reality with Interventions Using the Data Visualization Literacy Framework,” arXiv preprint arXiv:2112.02159, 2021. [Online]. Available: https://arxiv.org/abs/2112.02159.

L. L. Godwin, Y. Ju, […], A. Bueckle, et al., “Robust and generalizable segmentation of human functional tissue units,” biorXiv preprint biorXiv:2021.11.09.467810v1, 2021. [Online]. Available: https://www.biorxiv.org/content/10.1101/2021.11.09.467810v1. doi: 10.1101/2021.11.09.467810

K. Börner, S. Teichmann, […] A. Bueckle, et al., “Anatomical structures, cell types and biomarkers of the Human Reference Atlas,” Nature Cell Biology, vol. 23, no. 11, 2021. doi: doi.org/10.1038/s41556-021-00788-6.

A. Bueckle, K. Buehling, P. C. Shih, and K. Börner, “3D Virtual Reality vs. 2D Desktop Registration User Interface Comparison,” PLOS One, vol. 16, no. 10, 2021. doi: 10.1371/journal.pone.0258103.

A. Bueckle, “Optimizing Performance and Satisfaction in Virtual Reality Environments with Interventions using the Data Visualization Literacy Framework”. Thesis, Doctor of Philosophy: Katy Börner, Patrick Shih, John Walsh, Rob Montoya. Indiana University, Bloomington, IN, 2021. doi: 10.13140/RG.2.2.33214.00328

K. Börner, S. A. Teichmann, E. M. Quardokus, J. Gee, K. Browne, D. Osumi-Sutherland, B. W. Herr II, A. Bueckle, et al., “Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas,” bioRxiv preprint, 2021, doi: 10.1101/2021.05.31.446440

K. Börner, E. M. Quardokus, B. W. Herr II, L. E. Cross, E. G. Record, Y. Ju, A. Bueckle, J. P. Sluka, J. C. Silverstein, K. M. Browne, S. Jain, C. H. Wasserfall, M. L. Jorgensen, J. M. Spraggins, N. H. Patterson, M. A. Musen, and G. M. Weber, “Construction and Usage of a Human Body Common Coordinate Framework Comprising Clinical, Semantic, and Spatial Ontologies,” arXiv preprint arXiv:2007.14474, 2020. [Online]. Available: https://arxiv.org/abs/2007.14474.

K. Börner, A. Bueckle, and M. Ginda, “Data visualization literacy: Definitions, conceptual frameworks, exercises, and assessments,” Proceedings of the National Academy of Sciences, vol. 116, no. 6, pp. 1857-1864, 2019, doi: 10.1073/pnas.1807180116.

K. Börner, A. H. Simpson, A. Bueckle, and R. L. Goldstone, “Science map metaphors: a comparison of network versus hexmap-based visualizations,” Scientometrics, vol. 114, no. 2, pp. 409-426, 2018, doi: 10.1007/s11192-017-2596-3.

K. Börner, A. Bueckle, P. Beesley, and M. Spremulli, “Lifting the Veil: Visualizing Sentient Architecture,” presented at the Future Technologies Conference, Vancouver, BC, Canada, 2017. [Online]. Available: https://cns.iu.edu/docs/publications/2017-Lifting-the-Veil.pdf.

Talks (selection)

A. Bueckle, Allissa Dillmann, “Episode 12: Exploring the Human Reference Atlas (HRA) Organ Gallery in Immersive 3D,” Decoding the Data Ecosystem Podcast by the CFDE Training Center (December), 2025. [Official link on blubrry]

A. Bueckle, Bruce W. Herr II, “Cell Type Populations for 3D Anatomical Structures of the Human Reference Atlas,” HuBMAP Cell-Specific Atlases & Manuscripts (December), 2025.

A. Bueckle, “Turning Data into Insights with the Data Visualization Literacy Framework: A Hands-on Session using Power BI,” Invited Talk for Women Who Code at the IU Center of Excellence for Women & Technology (November), 2025. [Event Announcement]

A. Bueckle, “Multiscale VR Exploration of the 3D Human Reference Atlas Provides Novel Insights into Health, Aging, and Disease,” Invited talk at the Ludwig Boltzmann Institute for Network Medicine, Vienna, Austria (November), 2025.

A. Bueckle, Christiane V. R. Hütter, Sebastian Pirch, Felix Müller, Philipp Friedrich, Martin Chiettini, Jörg Menche, Katy Börner, “TALK, TRY, TELL: Challenges and Opportunities for Theory-Grounded Data Visualization in Extended Reality,” Panel with Niklas Elmqvist, Renata G. Raidou, Chris Bryan, Hannes Kaufmann, and Peter Mindek at IEEE VIS, Vienna, Austria (November), 2025. [Recording] [Panel website]

A. Bueckle, “Multiscale VR Exploration of the 3D Human Reference Atlas Provides Novel Insights into Health, Aging, and Disease,” Cellular Senescence Network (SenNet) Early-Stage Investigators Working Group (October), 2025.

A. Bueckle, Bruce W. Herr II, “News from IU: 5-Star Linked Open Data for Cell Type Populations and Digital Objects from the Human Reference Atlas via the HRA Knowledge Graph,” Cellular Senescence Network (SenNet) SciTech Webinar Series (October), 2025. [Recording]

A. Bueckle, “Data Visualization: A Deep Dive into Resources Available at IU via ENGR-E 583/483,” Community of Practice Session on Data Visualization via AnalytiXIN, Bloomington, IN (October), 2025.

A. Bueckle, “Virtual Reality for Data and Biomedical Visualization,” Guest Lecture in ENGR-E 500 (Introduction to the Intelligent Systems Engineering Program), Bloomington, IN (October), 2025.

A. Bueckle, Bruce W. Herr II, Josef Hardi, Ellen M. Quardokus, Mark A. Musen, Katy Börner. “Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph,” Poster at the  Fall 2025 Meeting of the Cellular Senescence Network (SenNet)  at Johns Hopkins University Bloomberg Center, Washington, DC, September 2025.

A. Bueckle, Bruce W. Herr II, Lu Chen, Daniel Bolin, Danial Qaurooni, Michael Ginda, Yashvardhan Jain, Aleix Puig-Barbe, Kristin Ardlie, Fusheng Wang, Katy Börner. “Constructing and Using Cell Type Populations of the Human Reference Atlas,” Poster at the  Fall 2025 Meeting of the Cellular Senescence Network (SenNet) at Johns Hopkins University Bloomberg Center, Washington, DC, September 2025.

A. Bueckle, “Human Reference Atlas Digital Objects for 10th HRA Release, v2.4”, Presentation in the HuBMAP Steering Committee Meeting (September), 2025.

A. Bueckle, “HuBMAP JumpStart Fellowship: The Multiscale Human: Exploring the Human Body in 3D Across Scales in Virtual Reality,” JumpStart Quarterly Meeting with NIH, virtual (August), 2025.

A. Bueckle, “Data visualization literacy: Definitions, conceptual frameworks, exercises, and assessments,” Center for Open Digital Innovation and Participation (CODIP), virtual (June), 2025.

A. Bueckle, “HuBMAP JumpStart Fellowship: Multiscale VR Exploration of the 3D Human Reference Atlas Provides Novel Insights into Health, Aging, and Disease,” CFDE Public Webinar Series (June), 2025. [Video recording]

A. Bueckle, “JumpStart Fellowship: Virtual Reality Enables Multiscale Exploration of the Human Reference Atlas,” Early-Stage Investigator Spotlight Talk at HuBMAP Annual Meeting, Philadelphia, PA (May), 2025.

A. Bueckle, “Virtual Reality Enables Multiscale Exploration of the Human Reference Atlas,” Hands-on/poster demo at HuBMAP Annual Meeting, Philadelphia, PA (May), 2025.

A. Bueckle, B. W. Herr II, J. Hardi, E. M. Quardokus, M. Musen, K. Börner, “Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph for Linked Open Data,” Poster at HuBMAP Annual Meeting, Philadelphia, PA (May), 2025.

A. Bueckle, B. W. Herr II, J. Hardi, E. M. Quardokus, M. Musen, K. Börner, “Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph for Linked Open Data,” Poster at SenNet Annual Meeting, Philadelphia, PA (April), 2025.

A. Bueckle, “Virtual Reality Enables Multiscale Exploration of the Human Reference Atlas”, Image Analysis Working Group, Cancer Systems Biology Consortium (CSBC) (April), 2025.

A. Bueckle, “Virtual Reality Enables Multiscale Exploration of the Human Reference Atlas & Optimization of Movement Tasks”, Research Group “Communities in Virtual Learning Spaces” at CODIP, TU Dresden (April), 2025.

A. Bueckle, B. W. Herr II, “Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage”, Presentation on the Nature Methods paper at https://doi.org/10.1038/s41592-024-02563-5 in the HuBMAP Steering Committee Meeting (April), 2025.

A. Bueckle, “Virtual Reality Enables Multiscale Exploration of the Human Reference Atlas”, CFDE Spring Meeting, Bethesda, MD (March), 2025.

A. Bueckle, “Designing a User Study for Lifeguard VR Training in Virtual Reality”, Red Cross Scientific Advisory Council (Aquatics Subcommittee) Meeting, Las Vegas, NV, and Virtual. Invited by: Dr. William Ramos (January), 2025.

J. Juergens, A. Bueckle, “A Fantastic Voyage: HuBMAP Human Reference Atlas Workshop Offers Virtual Reality Tour of Human Organs and the Data Inside Them”, 2025. Available: https://cfdeknowledge.org/r/kc_news_item?id=643

A. Bueckle, T. Davison, C. V. R. Hütter, S. Pirch, M Chiettini, “Why 3D?” 24h Multiscale Human Event (December), 2024. Video, slides

A. Bueckle, T. Isenberg, L. Autin, G. Weber, “Multiscale Visualizations,” 24h Multiscale Human Event (December), 2024. Video, slides

A. Bueckle, R. Strack, A. Scharnhorst, “Publishers & Editors,” 24h Multiscale Human Event (December), 2024. Video, slides

A. Bueckle, “Virtual Reality Training with the Data Visualization Literacy Framework,” VR Safety – Visit at Polygon Composites via AnalytiXIN (December), 2024.

A. Bueckle, B. W. Herr II, “Using the Human Reference Atlas from Python Notebooks,” Cellular Senescence Network (SenNet) Consortium Organization and Data Coordination Center (CODCC) Meeting (November), 2024. [Recording (restricted access)]

A. Bueckle, H. Phatnani, “Showing scenescence in virtual reality,” Video Demo (November), 2024. Video

A. Bueckle, “A Deep Dive into Resources Available at IU via ENGR-E 583/483,” Community of Practice Session on Data Visualization, AnalytiXIN, virtual (October), 2024.

A. Bueckle, “Human Reference Atlas (HRA): Powers of Ten Workshop,” Workshop in the Bioinformatics and Computational Biosciences Branch Bioviz Lab at the National Institute of Allergy and Infectious Diseases (financed by Andreas’s NIH HuBMAP JumpStart Fellowship 2024-2025), Rockville, MD, 2024. Event website: https://cns-iu.github.io/workshops/2024-10-24-jumpstart-workshop/

B. W. Herr II, A. Bueckle, “Team 1: MC-IU Hackathon Presentation on HRA Hierarchical Cell Types,” Fall Hackathon on HuBMAP Data Portal Workspaces (October), 2024. [Code]

A. Bueckle, B. W. Herr II, “Human Reference Atlas 5-star Linked Open Data: Construction, Publication, and Usage,” Cellular Senescence Network (SenNet) Consortium Organization and Data Coordination Center (CODCC) Meeting (September), 2024. [Recording]

A. Bueckle, “Building and Exploring the Human Reference Atlas with Virtual and Mixed Reality,” Live demo at the SenNet Consortium Fall Meeting, La Jolla, CA (September), 2024. Video demo of senescence visualization in VR

A. Bueckle, “Building and Exploring the Human Reference Atlas with Virtual and Mixed Reality,” Monthly SenNet Science Talk, virtual (July), 2024

A. Bueckle, “Building and Exploring the Human Reference Atlas with Virtual and Mixed Reality,” Summer Academy for Math and Science at Carnegie Mellon University, virtual, (July), 2024

A. Bueckle, “Brown Bag Chat with participants of the HuBMAP Undergraduate Student Internship Program,” organized by the HuBMAP Undergraduate Student Internship Program (July), 2024.

A. Bueckle, “Lateral Thinking Gone VR: Enabling Geospatial and Topical Insights in Virtual Reality,” Demo at Debut of the 20th Iteration of Places & Spaces: Mapping Science Exhibit (June), 2024. [Entry on scimaps.org, app, documentation]

A. Bueckle, “Demo: Human Reference Atlas User Stories 1 and 2,” Cellular Senescence Network (SenNet) Consortium Organization and Data Coordination Center (CODCC) Meeting (June), 2024. [Recording]

A. Bueckle, B. W. Herr II, “Building & Exploring the Human Reference Atlas with Virtual Reality (VR),” Oxford Global Monthly Science Exchange: Cell Atlases & Genome Projects (May), 2024. [Announcement]

A. Bueckle, L. Chen, “JumpStart Results: Building and Exploring the Human Reference Atlas with Virtual Reality (VR)” Junior Investigator Spotlight during HuBMAP Annual Meeting, VisArts Center, Rockville, MD (May), 2024.

A. Bueckle, “Building and Exploring the Human Reference Atlas with Virtual Reality,” Laboratory of Data Science (co-sponsored with Data Hub Club), Purdue University Fort Wayne, virtual (April), 2024.

A. Bueckle, “The HRA Diversity Survey in HIVE2 Y2,” Human Reference Atlas Working Group Meeting (April), 2024.

A. Bueckle, “The HRA Diversity Survey in HIVE2 Y2,” HuBMAP Training, Engagement, and Diversity Working Group Meeting (April), 2024.

A. Bueckle, “Review: NIH-CZI Junior Investigators Atlas Builders Meeting 2024,” HuBMAP Steering Committee Meeting (April), 2024.

A. Bueckle, “Building and Exploring the Human Reference Atlas with Virtual Reality,” STEM Speaker Series at Pasco-Hernando State College, New Port Richey, FL via Louis Stokes Alliances for Minority Participation (LSAMP) and Skype a Scientist (March), 2024.

A. Bueckle, “Career Planning & Enabling Interdisciplinary Collaborations,” Workshop with panelists Richard Conroy, Ph.D., M.B.A (NIH), Katy Börner, Ph.D. (Indiana University), Felicia Qashu, Ph.D. (NIH), and Shannon Hughes, Ph.D. (NIH) at the NIH-CZI Junior Investigators Atlas Builders Meeting in North Bethesda, MD 20852 (March), 2024.

A. Bueckle, “Poster/Demo: Building the Human Reference Atlas with Virtual Reality,” Poster and Demo at NIH-CZI Junior Investigators Atlas Builders Meeting in North Bethesda, MD 20852 (March), 2024.

A. Bueckle, “Keynote: Building and Exploring the Human Reference Atlas with Virtual Reality,” Keynote at DIPY Workshop (List of Speakers) (March), 2024. [Recording]

Co-moderated plenary session “From Normal to Pre-Cancer to Cancer (part 2” at Human Tumor Atlas Network – Human BioMolecular Atlas Program Joint Meeting (January), 2024.

Y. Jain, Y. Ju, D. Qaurooni, A. Bueckle, K. Börner, “Vasculature Common Coordinate Framework Distance Visualizations Across Organs and Imaging Technologies,” Poster at Human Tumor Atlas Network – Human BioMolecular Atlas Program Joint Meeting (January), 2024.

A. Bueckle, “Demo: Human Reference Atlas Biological Use Cases and
User Story 1 and User Story 2,” Human Tumor Atlas Network – Human BioMolecular Atlas Program Joint Meeting (January), 2024.

A. Bueckle, “The HRA Organ Gallery affords immersive superpowers for building and exploring the Human Reference Atlas with virtual reality,” Molecular Medicine and PhD Lecture Series, Paracelsus Medical University (PMU), virtual (January), 2024.

A. Bueckle, “The HRA Organ Gallery affords immersive superpowers for building and exploring the Human Reference Atlas with virtual reality,” Center for Computational Biology and Bioinformatics Seminar, Indiana University School of Medicine, Indianapolis, IN (January), 2024.

A. Bueckle, M. Alla, S. Sawant, “Data Visualizations in Virtual Reality,” 24h “Macroscopes: Interactive Data Visualizations” Event, 8p Timeslot (virtual, December), 2023. Link to video

A. Bueckle, S. Nath, “Building a Human Reference Atlas in VR,” Life and Beyond Podcast (December), 2023. Link to the episode on YouTube.

A. Bueckle, B. W. Herr II, K. Börner, “Demo: HRA Biological Use Cases and User Stories 1 and 2,” HuBMAP Demo Day, (December) 2023. Link to slides.

A. Bueckle, “The HRA Organ Gallery affords immersive superpowers for building and exploring the Human Reference Atlas with virtual reality,” Oxyopia – Vision Science Seminar Demo, Indiana University School of Optometry, Bloomington, IN (December), 2023.

A. Bueckle, J. Bisciotti, N. L. Klauss Soleiman, “Building a Human Reference Atlas in VR,” Cellular Senescence Network: Consortium Organization and Data Coordinating Center “Researcher of the Week” Series (November), 2023. Link to recording.

A. Bueckle, “Building a Human Reference Atlas,” Gerontological Society of America Annual Meeting 2023, Panel on Senescence New Frontiers – SenNet Consortium (November), 2023. doi: 10.1093/geroni/igad104.1556

A. Bueckle, “Building Superpowers with the 3D Models of the Human Reference Atlas into the HRA Organ Gallery in Virtual Reality,” Luddy SICE Virtual Heritage Talk Series titled “What is a Model?” (November), 2023.

A. Bueckle, “The HRA Organ Gallery Affords Immersive Superpowers for Building and Exploring the Human Reference Atlas with Virtual Reality,” SenNet Consortium CODCC Weekly Meeting (November), 2023.

A. Bueckle, L. Chen, “Update: Quality Control/Quality Assurance for the Human Reference Atlas and On-Ramping to the HuBMAP Portal Using the HRA Organ Gallery in Virtual Reality,” NIH Working Group Meeting for the Human BioMolecular Atlas Program (October), 2023.

A. Bueckle, L. Chen, “Show me in VR? Hackathon for the Human Reference Atlas (HRA) Organ Gallery,” Hackathon in the Bioinformatics and Computational Biosciences Branch Bioviz Lab at the National Institute of Allergy and Infectious Diseases (financed by Andreas’s NIH HuBMAP JumpStart Fellowship 2023-2024), Rockville, MD, 2023. Event website: https://cns-iu.github.io/workshops/2023-10-18-nih-3d-hackathon

A. Bueckle, “Brown Bag Chat with participants of the HuBMAP Underrepresented Student Internship Program at NIH,” HUBMAP Underrepresented Student Internship Program at NIH (August), 2023.

Chaired sessions on “Funding and Policy” and “Collaboration and Networks” at International Society for Informetrics and Scientometrics (ISSI) Conference, Indiana University, Bloomington, IN 2023.

A. Tapia Batres, A. Bueckle, “Demonstrating the Human Reference Atlas Organ Gallery in Virtual Reality,” HuBMAP Underrepresented Student Internship Program Extra Session, 2023.

A. Bueckle, “Diversity, Equity, and Inclusion (DEI) and Outreach for HuBMAP: Plans to Enhance Diverse Perspectives,” Session Facilitator at HuBMAP Annual All Hands Meeting, Vanderbilt University, Nashville, TN 2023.

A. Bueckle, “The HRA Organ Gallery Affords Immersive Superpowers for Building and Exploring the Human Reference Atlas with Virtual Reality,” Demo Session at HuBMAP Annual All Hands Meeting, Vanderbilt University, Nashville, TN 2023.

A. Bueckle, H. Shah, “Updates from MC-IU: Vascular Common Coordinate Framework (VCCF) and Using the CCF API in the HRA Organ Gallery + CTPop Bar Graphs,” HuBMAP Visualization and User Experience (VUE) Working Group, 2023.

A. Bueckle, K. Buehling, M. Ginda, “Show me in VR? A Workshop on Visualizing Network Data in Virtual Reality,” International Society for Informetrics and Scientometrics (ISSI) Conference, Indiana University, Bloomington, IN 2023. Official Agenda Entry: https://www.conftool.pro/issi2023/index.php?page=browseSessions&form_session=4. Event website: https://cns-iu.github.io/workshops/2023-07-02-issi-vr-workshop

A. Bueckle, “The HRA Organ Gallery Affords Immersive Superpowers for Building and Exploring the Human Reference Atlas with Virtual Reality,” Data Science Junior Faculty/Postdoc Panel, Indiana University, Bloomington, IN 2023.

A. Bueckle, ” The HRA Organ Gallery in Virtual Reality v0.6.4,” HuBMAP Demo Day, New York Genome Center, New York City, NY, 2023.

A. Bueckle, ” The Human Reference Atlas Data Organ Gallery: A Vision in Virtual Reality,” NIH Junior Investigators Atlas Builder Meeting, New York City, NY, 2023.

R. M. Ferreira, A. Bueckle, “FAIR Data Sharing, Visualizations, and APIs in Atlas Building,” NIH Junior Investigators Atlas Builder Meeting, New York City, NY, 2023.

A. Bueckle, C. Qing, S. Luley, R. Halloran, N. Pandey, Y. Kumar, “The Human Reference Atlas in VR”, 24h Human Reference Atlas Event, 8p Timeslot (virtual), 2022. Link to video: https://youtu.be/uOY9X-Bp-8U

A. Bueckle, M. Ginda, “Data Visualization: Resources”, Guest Lecture in Communications Bootcamp for PhD Students, (instructors: Tatiana Kolovou, Dave Yewman), 2022.

A. Bueckle, “Exploring Data in VR: Opportunities and Challenges”, Tech Tuesday Series by IN3 and Midwest Tech Bridge, The Mill, Bloomington, IN, 2022.

A. Bueckle, “Ups and Downs of Being a Graduate Student in XR”, Young Investigator Panel + Q&A, HuBMAP Summer Internship Weekly Meeting (August), 2022.

A. Bueckle, “XR in Academia & Education”, Scientific Panel, Johns Hopkins University Applied Physics Lab XR Symposium (July), 2022.

A. Bueckle, “Explore Human Reference Atlas Data in 3D VR”, Johns Hopkins University Applied Physics Lab XR Symposium (July), 2022.

A. Bueckle, “Onboarding TMCs: CCF Registration User Interface (RUI) and CCF Exploration User Interface (EUI)”, SenNet SciTech Talk (April), 2022.

A. Bueckle et al., “SPOKE-VIS and SPOKE-BRIC Updates: Envisioning SPOKE and User Studies”, NSF C-ACCEL All Hands (April), 2022.

A. Bueckle, “Using the Common Coordinate Framework (CCF) Registration User Interface (RUI) and Exploration User Interface (EUI)”, GTEx Steering Committee Monthly Call (April), 2022.

K. Ardlie, […] A. Bueckle, et al., “Cloud-Based Common Coordinate Framework to Enable Integration and Analyses Across GTEx and HuBMAP Data”, Common Fund Data Ecosystem Cross-Pollination Event, 2022.

A. Bueckle, “Living and Learning in the Metaverse,” TEDxIndianaUniversity, Buskirk-Chumley Theater, Bloomington, IN, USA, 2022. Available: TEDxIndianaUniversity Website. Video: Link on YouTube, Link on TED.com.

A. Bueckle, “Data Visualization and Virtual Reality”, Guest Lecture in ENGR-E 500, Introduction to Intelligent Systems Engineering at Indiana University (instructor: Dr. Martin Swany), 2022.

K. Börner, A. Bueckle, “Scalable Precision Medicine Oriented Knowledge Engine: Graph Visualization and UI”, NSF C-Accel Project All-Hands Meeting, 2021.

A. Bueckle, “Three Projects in Virtual Reality”, Guest Lecture in UI/UX Design 24-Week Bootcamp at George Washington University (Instructor: Kyle Overton), 2021.

A. Bueckle, “Three Projects in Virtual Reality”, Guest Lecture in COMP 4600 at University of Denver (Instructor: Dr. Sanchari Das), 2021.

A. Bueckle, “Your Place or My Place? Comparing User Study Methodology between Remote and In-Person VR Experiments for Data Visualization Tasks”, CNS Research Showcase, 2021. [video]

A. Bueckle (moderator), L. Godwin, Devta Kidd, “Unleash the True Value of Your Data: A Panel on the Visual Analytics Certificate”, Panel at Innovation Week at The Dimension Mill, 2021.

K. Börner, A. Bueckle, “Collaboration and Communication in Science (Using Data Visualization)”, Dagstuhl Seminar on Visualization of Biological Data – From Analysis to Communication, 2021.

A. Bueckle, B. Herr, “Register your tissue so it can be explored in context: New releases of the CCF Registration and Exploration User Interfaces”, HuBMAP SciTech Webinar, 2021.

A. Bueckle, Kilian Buehling, “The SPOKE User Study: Research Questions and Study Design,” Monthly Call for IEEE Special Issue on Multi-level Graph Representations for Big Data in Science, 2021.

A. Bueckle, “Optimizing Performance and Satisfaction in Matching and Movement Tasks in Virtual Reality with Interventions Using the Data Visualization Literacy Framework”, Doctoral Dissertation Defense, 2021. [video]

A. Bueckle, “The CCF Tissue Registration User Interface (RUI) and Exploration User Interface (EUI)”, Common Fund Data Ecosystem (CFDE) Workshop on Introduction to 3D Tissue Mapping, 2021.

A. Bueckle, “The CCF Tissue Registration User Interface (RUI)”, Spatial Biology Europe (Online), 2021.

A. Bueckle, “Science Map Metaphors: A Comparison of Network Versus Hexmap-Based Visualization”, Dagstuhl Seminar on Multi-Level Graph Representation for Big Data Arising in Science Mapping, 2021. [video] [paper]

A. Bueckle, Kilian Buehling, “Using VR Data Visualizations to Improve Time, Accuracy, Satisfaction in 2D Desktop vs. VR RUI”, CNS Research Showcase, 2021. [video]

A. Bueckle, Katy Börner, “HuBMAP Reference Atlas: ASCT+B Tables & 3D Reference Library Registration User Interface & Visible Human Massive Open Online Course”, HuBMAP SciTech Webinar, 2021.

A. Bueckle, “‘I feel like Superman (in Luddy Hall)’: Optimizing Performance in Virtual Reality Navigation Tasks with Interventions Using the Data Visualization Literacy Framework”, Cyberinfrastructure for Network Science Center Create & Innovate Talk Series, 2021. [video]

Y. Jain, Andreas Bueckle, Ellen M. Quardokus, Yingnan Ju, Seth Winfree, Hrishikesh Paul, Bruce W. Herr II, Nick Tustison, James Gee, and Katy Börner, “R2UI: Adding ANTs to the Registration User Interface (RUI) to Support Spatial Registration of Tissue Blocks at Single-Cell Level” (Poster), HuBMAP December Demo Day, 2020.

A. Bueckle, Kilian Buehling, “Comparing Time, Accuracy, Satisfaction, and Accomplishment in Virtual Reality vs. Desktop Implementation of the Common Coordinate Framework Registration User Interface (CCF RUI)”, Cyberinfrastructure for Network Science Center Research Showcase, 2020. [video]

A. Bueckle, “Investigating Your Traces: Optimizing Completion Times and Accuracy for Manipulation Tasks in Virtual Reality using Data Visualization”, The Campus Alliance for Advanced Visualization Conference (CAAVCon), 2020.

A. Bueckle, Ellen M. Quardokus, Yingnan Ju, Sumeet Sarode, Yashvardhan Jain, Seth Winfree, Hrishikesh Paul, Bruce W. Herr II, Nick Tustison, James Gee, and Katy Börner, “R2UI: Stage 2 Registration User Interface for HuBMAP for Accurate Spatial Registration of Tissue Blocks and Associated Cell Types and Biomarkers Within 3D Organ Models” (Poster), Human Biomolecular Atlas HIVE Virtual Demo Day, 2020.

A. Bueckle, “The Making of the Visible Human Massive Open Online Course: Empowering HuBMAP members with the Force of Video”, Human Biomolecular Atlas HIVE Virtual Demo Day, 2020.

A. Bueckle and Kilian Buehling, “The Common Coordinate Framework Registration User Interface (CCF RUI): A Comparison of Three Modalities”, Luddy School of Informatics, Computing, and Engineering, Indiana University Bloomington, IN, USA, 2019.

A. Bueckle, Leonard Cross, and Katy Börner, “HuBMAP CCF Registration User Interface (RUI)”, HuBMAP Inaugural Sci/Tech Webinar Series, Indiana University Bloomington, IN, USA, 2019.

A. Bueckle, “Data Visualization Literacy Gone Virtual”, The Campus Alliance for Advanced Visualization conference (CAAV), Indiana University Bloomington, IN, USA, 2019. Video recording

A. Bueckle, “Make-a-Vis & Tavola”, VISUALISE conference, Exploratorium, San Francisco, CA, USA, 2019. [video] [proceedings]

A. Bueckle and K. Börner, “Envisioning the Internet of Things”, Living Architecture Systems Group Symposium, Toronto, ON, Canada, 2019. [video] [proceedings](Keynote)

A. Bueckle, “Mapping Science, Technology, and Expertise on a Global Scale”, Pacific Operational Science & Technology Conference, Honolulu, HI, USA, 2018.

A. Bueckle, “IoT Visualization & Amatria”, Scientific Visualization Workshop Series, Indiana University Bloomington, IN, USA, 2018.

A. Bueckle, “Lifting the Veil: Visualizing Sentient Architecture”, Future Technologies Conference, Vancouver, BC, Canada, 2017. [proceedings] (Best Presentation Award)

A. Bueckle and Y. Ju, “Breathing Life into Things: Sentient Architecture & Augmented Reality”, Fashion Tech Week NY, New York City, NY, USA, 2017.

A. Bueckle, “Sentient Architecture: Visualizing Signal Flow in Intelligent Systems”, Intelligent & Interactive Systems Talk Series, Luddy School of Informatics, Computing, and Engineering, Indiana University Bloomington, IN, USA, 2017.

A. Bueckle, “Sentient Architecture: Visualizing Signal Flow in Intelligent Systems”, 1^st Annual Graduate Conference at the Media School, Indiana University Bloomington, IN, USA, 2017.

A. Bueckle, “Science Forecast”, Modeling Science, Technology & Innovation Conference, Washington D.C., USA, 2016.

A. Bueckle, “Enhancing Sentient Architecture with Augmented Reality”, Living Architecture Systems Group Symposium, Toronto, ON, Canada, 2016. [white papers]

A. Bueckle, “Communicating and Visualizing the Internet of Things: Designing Augmented-Reality Data Visualizations to Communicate the Inner Workings of Living Architecture Sculptures to Enhance Computational Literacy”, ILS Doctoral Research Forum, Indiana University Bloomington, IN, USA, 2016.

A. Bueckle, “Communicating and Visualizing the Internet of Things: Designing Augmented-Reality Data Visualizations to Communicate the Inner Workings of Living Architecture Sculptures to Enhance Computational Literacy”, ILS Doctoral Research Forum, Indiana University Bloomington, IN, USA, 2016.

Invited Speakers Hosted

Hosted Sagar Indurkhya, Ph.D., Virtualitics, Inc. Title: “Using Explainable AI to Generate and Analyze Network Graphs,” Luddy Data Science Invited Speaker Series (April), 2024. Recording

Students mentored

Paean Luby, Independent Study in Informatics, workned on Pathology in VR (Univeristy of Galway, Ireland) for the HRA Organ Gallery in VR, Spring, 2025

Siddhi Chavan, Independent Study in Data Science, worked on elevator transition scenes and 2D bar graph visualizations in HRA Organ Gallery in VR, Fall 2025

Hunter X. Tang, University of Southern California student in computer science, summer internship, worked on HRA Organ Gallery in VR, May-August 2025

Keyur Parekh, Independent Study in Data Science, worked on implementing a prototype for a chemistry safety training app in VR, Spring 2025

Niteesha Jangan, hourly employee, she assisted with organizing https://cns-iu.github.io/workshops/2024-10-24-jumpstart-workshop/ as part of https://hubmapconsortium.org/jumpstart-program/#andreas2024, Fall 2025-Summer 2025

Yash Ramesh Kumar, hourly employee (developer), helped with https://humanatlas.io/hra-organ-gallery, Fall 2022, then Spring 2025

Devon Scoles, Independent Study in Computer Science, worked on reconstructing 3D cell positions via distances from endothelial cells for Vasculature Common Coordinate Framework (VCCF, see 10.1038/s41597-023-02018-0), Spring 2024

Juhi Khare, Independent Study in Human Computer Interaction, worked on developing a VR for https://cns-iu.github.io/workshops/2023-07-02-issi-vr-workshop as Supplemental Material for Macroscopes, Spring 2024

Mudrika Alla, Independent Study in Data Science, worked on turning VR application from https://cns-iu.github.io/workshops/2023-07-02-issi-vr-workshop into Supplemental Material for Macroscopes, Fall 2023 – Spring 2024

Shreyas Sawant, Independent Study in Data Science, worked on HRA Organ Gallery in VR, Fall 2023 – Spring 2024

Keira Murphy, Bloomington North Senior Internship Program, worked on HRA Organ Gallery in VR, August 2023-January 2024

Dhanush Chandra Raju Anegondi, Independent Study in Data Science, Remaking and Transferring ENGR-E 583/483 Assignment Information Visualization with Power BI, Fall 2023

Manya Mallikarjun, Independent Study in Data Science, Remaking and Transferring ENGR-E 583/483 Assignment Information Visualization with Power BI, Fall 2023

Alejandra Tapia Batres, Human Biomolecular Atlas Program (HuBMAP) Underrepresented Student Internship Program, worked on HRA Organ Gallery in VR, Summer 2023

Hunter X. Tang, Bloomington North Senior Internship Program, worked on HRA Organ Gallery in VR, May 2023-May 2024

N. Pandey, A. Bueckle, “Implementing and testing a better user interface for immersive feedback in virtual reality (VR)”. Capstone Project, Master of Science in Human Computer Interaction. Indiana University, Bloomington, IN, 2023. DOI forthcoming.

Y. Shah, A. Bueckle, “‘Lateral Thinking’ Gone VR: Mapping Telegram Groups and Channels in the German ‘Querdenken’ Movement in Response to the COVID-19 Pandemic”. Independent Study, Master of Science in Data Science. Indiana University, Bloomington, IN, 2023. DOI forthcoming.

D. Scoles, A. Bueckle, “HRA Organ Gallery VR Development”. Independent Study, Bachelor of Science in Computer Science. Indiana University, Bloomington, IN, 2023. DOI forthcoming.

C. Qing, A. Bueckle, “Lateral Thinking in VR”. Class project supervision for student’s Master of Science in Symbolic Systems, 2023. DOI forthcoming.

Riley Halloran, hourly employee (developer), worked on web component implementation for https://apps.humanatlas.io/rui/ and https://apps.humanatlas.io/eui/ using Unity, Fall 2022-Spring 2023

Guest Lectures (selection)

Demos and other appearances (selection)