Research

Also see: ResearchGate & Google Scholar

Papers

A. Bueckle, C. Qing, S. Luley, Y. Kumar, N. Pandey, and K. Börner, “The HRA Organ Gallery affords immersive superpowers for building and exploring the Human Reference Atlas with virtual reality,” Frontiers in Bioinformatics, vol. 3, 2023. doi: 10.3389/fbinf.2023.1162723

B. W. Herr II, J. Hardi, E. M. Quardokus, A. Bueckle, L. Chen, F. Wang, A. R. Caron, D. Osumi-Sutherland, M. A. Musen, and K. Börner, “Specimen, Biological Structure, and Spatial Ontologies in Support of a Human Reference Atlas,” Nature Scientific Data, 2023. doi: 10.1038/s41597-023-01993-8

K. Börner, A. Bueckle, et al., “Tissue Registration and Exploration User Interfaces in support of a Human Reference Atlas,” Nature Communications Biology, 2022. doi: 10.1038/s42003-022-03644-x

L. Chen, D. Teng, T. Zhu, J. Kong, B.W. Herr II, A. Bueckle, K. Börner, F. Wang, “Real-Time Spatial Registration for 3D Human Atlas,” BigSpatial ’22: Proceedings of the 10th ACM SIGSPATIAL International Workshop on Analytics for Big Geospatial Data, 2022. doi: 10.1145/3557917.3567618.

NIH SenNet Consortium (incl. A. Bueckle), “NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health,” Nature Aging, 2022. doi: https://doi.org/10.1038/s43587-022-00326-5

A. Bueckle, K. Buehling, P. C. Shih, and K. Börner, “Optimizing Performance and Satisfaction in Matching and Movement Tasks in Virtual Reality with Interventions Using the Data Visualization Literacy Framework,” Frontiers in Virtual Reality, vol. 2, 2022. doi: 10.3389/frvir.2021.727344.

A. Bueckle, K. Browne, B. W. Herr II, K. Börner, “The CCF Organ VR Gallery,” OSF preprint, 2022. [Online]. Available: https://osf.io/z9gm3 doi: 10.31219/osf.io/z9gm3

Bueckle, K. Browne, B. W. Herr II, K. Börner, “The CCF Organ VR Gallery,” Research Demo, 2022. [Online]. Available: https://youtu.be/S9pBOlSfsnc

A. Bueckle, K. Buehling, P. C. Shih, and K. Börner, “Optimizing Performance and Satisfaction in Matching and Movement Tasks in Virtual Reality with Interventions Using the Data Visualization Literacy Framework,” arXiv preprint arXiv:2112.02159, 2021. [Online]. Available: https://arxiv.org/abs/2112.02159.

L. L. Godwin, Y. Ju, […], A. Bueckle, et al., “Robust and generalizable segmentation of human functional tissue units,” biorXiv preprint biorXiv:2021.11.09.467810v1, 2021. [Online]. Available: https://www.biorxiv.org/content/10.1101/2021.11.09.467810v1. doi: 10.1101/2021.11.09.467810

K. Börner, S. Teichmann, […] A. Bueckle, et al., “Anatomical structures, cell types and biomarkers of the Human Reference Atlas,” Nature Cell Biology, vol. 23, no. 11, 2021. doi: doi.org/10.1038/s41556-021-00788-6.

A. Bueckle, K. Buehling, P. C. Shih, and K. Börner, “3D Virtual Reality vs. 2D Desktop Registration User Interface Comparison,” PLOS One, vol. 16, no. 10, 2021. doi: 10.1371/journal.pone.0258103.

A. Bueckle, “Optimizing Performance and Satisfaction in Virtual Reality Environments with Interventions using the Data Visualization Literacy Framework”. Thesis, Doctor of Philosophy: Katy Börner, Patrick Shih, John Walsh, Rob Montoya. Indiana University, Bloomington, IN, 2021. doi: 10.13140/RG.2.2.33214.00328

K. Börner, S. A. Teichmann, E. M. Quardokus, J. Gee, K. Browne, D. Osumi-Sutherland, B. W. Herr II, A. Bueckle, et al., “Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas,” bioRxiv preprint, 2021, doi: 10.1101/2021.05.31.446440

K. Börner, E. M. Quardokus, B. W. Herr II, L. E. Cross, E. G. Record, Y. Ju, A. Bueckle, J. P. Sluka, J. C. Silverstein, K. M. Browne, S. Jain, C. H. Wasserfall, M. L. Jorgensen, J. M. Spraggins, N. H. Patterson, M. A. Musen, and G. M. Weber, “Construction and Usage of a Human Body Common Coordinate Framework Comprising Clinical, Semantic, and Spatial Ontologies,” arXiv preprint arXiv:2007.14474, 2020. [Online]. Available: https://arxiv.org/abs/2007.14474.

K. Börner, A. Bueckle, and M. Ginda, “Data visualization literacy: Definitions, conceptual frameworks, exercises, and assessments,” Proceedings of the National Academy of Sciences, vol. 116, no. 6, pp. 1857-1864, 2019, doi: 10.1073/pnas.1807180116.

K. Börner, A. H. Simpson, A. Bueckle, and R. L. Goldstone, “Science map metaphors: a comparison of network versus hexmap-based visualizations,” Scientometrics, vol. 114, no. 2, pp. 409-426, 2018, doi: 10.1007/s11192-017-2596-3.

K. Börner, A. Bueckle, P. Beesley, and M. Spremulli, “Lifting the Veil: Visualizing Sentient Architecture,” presented at the Future Technologies Conference, Vancouver, BC, Canada, 2017. [Online]. Available: https://cns.iu.edu/docs/publications/2017-Lifting-the-Veil.pdf.

Talks (selection)

A. Bueckle, “Diversity, Equity, and Inclusion (DEI) and Outreach for HuBMAP: Plans to Enhance Diverse Perspectives,” Session Facilitator at HuBMAP Annual All Hands Meeting, Vanderbilt University, Nashville, TN 2023.

A. Bueckle, “The HRA Organ Gallery Affords Immersive Superpowers for Building and Exploring the Human Reference Atlas with Virtual Reality,” Demo Session at HuBMAP Annual All Hands Meeting, Vanderbilt University, Nashville, TN 2023.

A. Bueckle, H. Shah, “Updates from MC-IU: Vascular Common Coordinate Framework (VCCF) and Using the CCF API in the HRA Organ Gallery + CTPop Bar Graphs,” HuBMAP Visualization and User Experience (VUE) Working Group, 2023.

A. Bueckle, K. Buehling, M. Ginda, “Show me in VR? A Workshop on Visualizing Network Data in Virtual Reality,” International Society for Informetrics and Scientometrics (ISSI) Conference, Indiana University, Bloomington, IN 2023. Event website: https://cns-iu.github.io/workshops/2023-07-02-issi-vr-workshop

A. Bueckle, “The HRA Organ Gallery Affords Immersive Superpowers for Building and Exploring the Human Reference Atlas with Virtual Reality,” Data Science JuniorFaculty/Postdoc Panel, Indiana University, Bloomington, IN 2023.

A. Bueckle, ” The HRA Organ Gallery in Virtual Reality v0.6.4,” HuBMAP Demo Day, New York Genome Center, New York City, NY, 2023.

A. Bueckle, ” The Human Reference Atlas Data Organ Gallery: A Vision in Virtual Reality,” NIH Junior Investigators Atlas Builder Meeting, New York City, NY, 2023.

R. M. Ferreira, A. Bueckle, “FAIR Data Sharing, Visualizations, and APIs in Atlas Building,” NIH Junior Investigators Atlas Builder Meeting, New York City, NY, 2023.

A. Bueckle, M. Ginda, “Data Visualization: Resources”, Guest Lecture in Communications Bootcamp for PhD Students, (instructors: Tatiana Kolovou, Dave Yewman), 2022.

A. Bueckle, “Exploring Data in VR: Opportunities and Challenges”, Tech Tuesday Series by IN3 and Midwest Tech Bridge, The Mill, Bloomington, IN, 2022.

A. Bueckle, “Ups and Downs of Being a Graduate Student in XR”, Young Investigator Panel + Q&A, HuBMAP Summer Internship Weekly Meeting (August), 2022.

A. Bueckle, “XR in Academia & Education”, Scientific Panel, Johns Hopkins University Applied Physics Lab XR Symposium (July), 2022.

A. Bueckle, “Explore Human Reference Atlas Data in 3D VR”, Johns Hopkins University Applied Physics Lab XR Symposium (July), 2022.

A. Bueckle, “Onboarding TMCs: CCF Registration User Interface (RUI) and CCF Exploration User Interface (EUI)”, SenNet SciTech Talk (April), 2022.

A. Bueckle et al., “SPOKE-VIS and SPOKE-BRIC Updates: Envisioning SPOKE and User Studies”, NSF C-ACCEL All Hands (April), 2022.

A. Bueckle, “Using the Common Coordinate Framework (CCF) Registration User Interface (RUI) and Exploration User Interface (EUI)”, GTEx Steering Committee Monthly Call (April), 2022.

K. Ardlie, […] A. Bueckle, et al., “Cloud-Based Common Coordinate Framework to Enable Integration and Analyses Across GTEx and HuBMAP Data”, Common Fund Data Ecosystem Cross-Pollination Event, 2022.

A. Bueckle, “Living and Learning in the Metaverse,” TEDxIndianaUniversity, Buskirk-Chumley Theater, Bloomington, IN, USA, 2022. Available: TEDxIndianaUniversity Website. Video: Link on YouTube, Link on TED.com.

A. Bueckle, “Data Visualization and Virtual Reality”, Guest Lecture in ENGR-E 500, Introduction to Intelligent Systems Engineering at Indiana University (instructor: Dr. Martin Swany), 2022.

K. Börner, A. Bueckle, “Scalable Precision Medicine Oriented Knowledge Engine: Graph Visualization and UI”, NSF C-Accel Project All-Hands Meeting, 2021.

A. Bueckle, “Three Projects in Virtual Reality”, Guest Lecture in UI/UX Design 24-Week Bootcamp at George Washington University (Instructor: Kyle Overton), 2021.

A. Bueckle, “Three Projects in Virtual Reality”, Guest Lecture in COMP 4600 at University of Denver (Instructor: Dr. Sanchari Das), 2021.

A. Bueckle, “Your Place or My Place? Comparing User Study Methodology between Remote and In-Person VR Experiments for Data Visualization Tasks”, CNS Research Showcase, 2021. [video]

A. Bueckle (moderator), L. Godwin, Devta Kidd, “Unleash the True Value of Your Data: A Panel on the Visual Analytics Certificate”, Panel at Innovation Week at The Dimension Mill, 2021.

K. Börner, A. Bueckle, “Collaboration and Communication in Science (Using Data Visualization)”, Dagstuhl Seminar on Visualization of Biological Data – From Analysis to Communication, 2021.

A. Bueckle, B. Herr, “Register your tissue so it can be explored in context: New releases of the CCF Registration and Exploration User Interfaces”, HuBMAP SciTech Webinar, 2021.

A. Bueckle, Kilian Buehling, “The SPOKE User Study: Research Questions and Study Design,” Monthly Call for IEEE Special Issue on Multi-level Graph Representations for Big Data in Science, 2021.

A. Bueckle, “Optimizing Performance and Satisfaction in Matching and Movement Tasks in Virtual Reality with Interventions Using the Data Visualization Literacy Framework”, Doctoral Dissertation Defense, 2021. [video]

A. Bueckle, “The CCF Tissue Registration User Interface (RUI) and Exploration User Interface (EUI)”, Common Fund Data Ecosystem (CFDE) Workshop on Introduction to 3D Tissue Mapping, 2021.

A. Bueckle, “The CCF Tissue Registration User Interface (RUI)”, Spatial Biology Europe (Online), 2021.

A. Bueckle, “Science Map Metaphors: A Comparison of Network Versus Hexmap-Based Visualization”, Dagstuhl Seminar on Multi-Level Graph Representation for Big Data Arising in Science Mapping, 2021. [video] [paper]

A. Bueckle, Kilian Buehling, “Using VR Data Visualizations to Improve Time, Accuracy, Satisfaction in 2D Desktop vs. VR RUI”, CNS Research Showcase, 2021. [video]

A. Bueckle, Katy Börner, “HuBMAP Reference Atlas: ASCT+B Tables & 3D Reference Library Registration User Interface & Visible Human Massive Open Online Course”, HuBMAP SciTech Webinar, 2021.

A. Bueckle, “‘I feel like Superman (in Luddy Hall)’: Optimizing Performance in Virtual Reality Navigation Tasks with Interventions Using the Data Visualization Literacy Framework”, Cyberinfrastructure for Network Science Center Create & Innovate Talk Series, 2021. [video]

Y. Jain, Andreas Bueckle, Ellen M. Quardokus, Yingnan Ju, Seth Winfree, Hrishikesh Paul, Bruce W. Herr II, Nick Tustison, James Gee, and Katy Börner, “R2UI: Adding ANTs to the Registration User Interface (RUI) to Support Spatial Registration of Tissue Blocks at Single-Cell Level” (Poster), HuBMAP December Demo Day, 2020.

A. Bueckle, Kilian Buehling, “Comparing Time, Accuracy, Satisfaction, and Accomplishment in Virtual Reality vs. Desktop Implementation of the Common Coordinate Framework Registration User Interface (CCF RUI)”, Cyberinfrastructure for Network Science Center Research Showcase, 2020. [video]

A. Bueckle, “Investigating Your Traces: Optimizing Completion Times and Accuracy for Manipulation Tasks in Virtual Reality using Data Visualization”, The Campus Alliance for Advanced Visualization Conference (CAAVCon), 2020.

A. Bueckle, Ellen M. Quardokus, Yingnan Ju, Sumeet Sarode, Yashvardhan Jain, Seth Winfree, Hrishikesh Paul, Bruce W. Herr II, Nick Tustison, James Gee, and Katy Börner, “R2UI: Stage 2 Registration User Interface for HuBMAP for Accurate Spatial Registration of Tissue Blocks and Associated Cell Types and Biomarkers Within 3D Organ Models” (Poster), Human Biomolecular Atlas HIVE Virtual Demo Day, 2020.

A. Bueckle, “The Making of the Visible Human Massive Open Online Course: Empowering HuBMAP members with the Force of Video”, Human Biomolecular Atlas HIVE Virtual Demo Day, 2020.

A. Bueckle and Kilian Buehling, “The Common Coordinate Framework Registration User Interface (CCF RUI): A Comparison of Three Modalities”, Luddy School of Informatics, Computing, and Engineering, Indiana University Bloomington, IN, USA, 2019.

A. Bueckle, Leonard Cross, and Katy Börner, “HuBMAP CCF Registration User Interface (RUI)”, HuBMAP Inaugural Sci/Tech Webinar Series, Indiana University Bloomington, IN, USA, 2019.

A. Bueckle, “Data Visualization Literacy Gone Virtual”, The Campus Alliance for Advanced Visualization conference (CAAV), Indiana University Bloomington, IN, USA, 2019. Video recording

A. Bueckle, “Make-a-Vis & Tavola”, VISUALISE conference, Exploratorium, San Francisco, CA, USA, 2019. [video] [proceedings]

A. Bueckle and K. Börner, “Envisioning the Internet of Things”, Living Architecture Systems Group Symposium, Toronto, ON, Canada, 2019. [video] [proceedings](Keynote)

A. Bueckle, “Mapping Science, Technology, and Expertise on a Global Scale”, Pacific Operational Science & Technology Conference, Honolulu, HI, USA, 2018.

A. Bueckle, “IoT Visualization & Amatria”, Scientific Visualization Workshop Series, Indiana University Bloomington, IN, USA, 2018.

A. Bueckle, “Lifting the Veil: Visualizing Sentient Architecture”, Future Technologies Conference, Vancouver, BC, Canada, 2017. [proceedings] (Best Presentation Award)

A. Bueckle and Y. Ju, “Breathing Life into Things: Sentient Architecture & Augmented Reality”, Fashion Tech Week NY, New York City, NY, USA, 2017.

A. Bueckle, “Sentient Architecture: Visualizing Signal Flow in Intelligent Systems”, Intelligent & Interactive Systems Talk Series, Luddy School of Informatics, Computing, and Engineering, Indiana University Bloomington, IN, USA, 2017.

A. Bueckle, “Sentient Architecture: Visualizing Signal Flow in Intelligent Systems”, 1^st Annual Graduate Conference at the Media School, Indiana University Bloomington, IN, USA, 2017.

A. Bueckle, “Science Forecast”, Modeling Science, Technology & Innovation Conference, Washington D.C., USA, 2016.

A. Bueckle, “Enhancing Sentient Architecture with Augmented Reality”, Living Architecture Systems Group Symposium, Toronto, ON, Canada, 2016. [white papers]

A. Bueckle, “Communicating and Visualizing the Internet of Things: Designing Augmented-Reality Data Visualizations to Communicate the Inner Workings of Living Architecture Sculptures to Enhance Computational Literacy”, ILS Doctoral Research Forum, Indiana University Bloomington, IN, USA, 2016.

A. Bueckle, “Communicating and Visualizing the Internet of Things: Designing Augmented-Reality Data Visualizations to Communicate the Inner Workings of Living Architecture Sculptures to Enhance Computational Literacy”, ILS Doctoral Research Forum, Indiana University Bloomington, IN, USA, 2016.

Students mentored

N. Pandey, A. Bueckle, “Implementing and testing a better user interface for immersive feedback in virtual reality (VR)”. Capstone Project, Master of Science in Human Computer Interaction. Indiana University, Bloomington, IN, 2023. DOI forthcoming.

Y. Shah, A. Bueckle, “‘Lateral Thinking’ Gone VR: Mapping Telegram Groups and Channels in the German ‘Querdenken’ Movement in Response to the COVID-19 Pandemic”. Independent Study, Master of Science in Data Science. Indiana University, Bloomington, IN, 2023. DOI forthcoming.

D. Scoles, A. Bueckle, “HRA Organ Gallery VR Development”. Independent Study, Bachelor of Science in Computer Science. Indiana University, Bloomington, IN, 2023. DOI forthcoming.

C. Qing, A. Bueckle, “Lateral Thinking in VR”. Class project supervision for student’s Master of Science in Symbolic Systems, 2023. DOI forthcoming.

Guest Lectures (selection)

Demos and other appearances (selection)